Pakket: libbifrost-dev (1.3.5-2)

[ Bron: bifrost  ]

static library and header files for libbifrost

Libbifrost-dev is the development library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andere aan libbifrost-dev gerelateerde pakketten

• dep: libbifrost0 (= 1.3.5-2)

  library for parallel construction, indexing and querying of de Bruijn graphs

libbifrost-dev downloaden

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	629,7 kB	4.029,0 kB	[overzicht]
arm64	608,6 kB	4.021,0 kB	[overzicht]
ppc64el	663,9 kB	4.282,0 kB	[overzicht]
riscv64	2.555,7 kB	30.133,0 kB	[overzicht]
s390x	661,8 kB	4.212,0 kB	[overzicht]