Package: libfastahack-dev (1.0.0+dfsg-11 and others)

[ Source: libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Tags: Software Development: Libraries, Role: Development Library

Other Packages Related to libfastahack-dev

• dep: libfastahack0 (= 1.0.0+dfsg-11) [ia64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (= 1.0.0+dfsg-11+b2) [alpha, hppa, m68k, ppc64, sh4, sparc64, x32]

  dep: libfastahack0 (= 1.0.0+dfsg-11+b3) [amd64, arm64, armhf, i386, loong64, ppc64el, riscv64, s390x]

Download libfastahack-dev

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0.0+dfsg-11+b2	28.5 kB	162.0 kB	[list of files]
amd64	1.0.0+dfsg-11+b3	27.3 kB	117.0 kB	[list of files]
arm64	1.0.0+dfsg-11+b3	26.0 kB	116.0 kB	[list of files]
armhf	1.0.0+dfsg-11+b3	24.7 kB	88.0 kB	[list of files]
hppa (unofficial port)	1.0.0+dfsg-11+b2	27.0 kB	96.0 kB	[list of files]
i386	1.0.0+dfsg-11+b3	29.0 kB	101.0 kB	[list of files]
ia64 (unofficial port)	1.0.0+dfsg-11	33.3 kB	165.0 kB	[list of files]
loong64	1.0.0+dfsg-11+b3	106.4 kB	1,173.0 kB	[list of files]
m68k (unofficial port)	1.0.0+dfsg-11+b2	25.9 kB	96.0 kB	[list of files]
ppc64 (unofficial port)	1.0.0+dfsg-11+b2	27.3 kB	120.0 kB	[list of files]
ppc64el	1.0.0+dfsg-11+b3	27.5 kB	119.0 kB	[list of files]
riscv64	1.0.0+dfsg-11+b3	108.3 kB	1,259.0 kB	[list of files]
s390x	1.0.0+dfsg-11+b3	26.9 kB	116.0 kB	[list of files]
sh4 (unofficial port)	1.0.0+dfsg-11+b2	25.9 kB	84.0 kB	[list of files]
sparc64 (unofficial port)	1.0.0+dfsg-11+b2	23.0 kB	108.0 kB	[list of files]
x32 (unofficial port)	1.0.0+dfsg-11+b2	27.1 kB	99.0 kB	[list of files]