Package: eigensoft (8.0.0+dfsg-2)

[ Source: eigensoft  ]

reduction of population bias for genetic analyses

The EIGENSOFT package combines functionality from the group's population genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.

Other Packages Related to eigensoft

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) -- library package

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: liblapacke (>= 3.11.0) [ia64, s390x, sh4]

  Library of linear algebra routines 3 - C lib shared version

  dep: liblapacke (>= 3.12.0) [not ia64, s390x, sh4]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• rec: gnuplot

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

Download eigensoft

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	480.8 kB	4,583.0 kB	[list of files]
amd64	504.3 kB	3,869.0 kB	[list of files]
arm64	463.9 kB	4,385.0 kB	[list of files]
armel	404.3 kB	3,564.0 kB	[list of files]
armhf	392.1 kB	2,732.0 kB	[list of files]
hppa (unofficial port)	424.3 kB	3,598.0 kB	[list of files]
i386	493.9 kB	3,787.0 kB	[list of files]
ia64 (unofficial port)	520.5 kB	7,400.0 kB	[list of files]
m68k (unofficial port)	411.2 kB	3,262.0 kB	[list of files]
mips64el	470.9 kB	4,607.0 kB	[list of files]
ppc64 (unofficial port)	517.4 kB	5,473.0 kB	[list of files]
ppc64el	531.4 kB	5,409.0 kB	[list of files]
riscv64	503.1 kB	3,369.0 kB	[list of files]
s390x	501.9 kB	4,541.0 kB	[list of files]
sh4 (unofficial port)	438.5 kB	3,822.0 kB	[list of files]
sparc64 (unofficial port)	397.2 kB	11,898.0 kB	[list of files]
x32 (unofficial port)	504.6 kB	3,836.0 kB	[list of files]