Paketti: libseqlib-dev (1.2.0+dfsg-11)

[ Source: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Tagit: Software Development: Kirjastot, Role: Development Library

Muut pakettiin libseqlib-dev liittyvät paketit

• dep: libbwa-dev

  Burrows-Wheeler Aligner source files

• dep: libfml-dev

  development headers for libfml

• dep: libhts-dev

  development files for the HTSlib

• dep: libjsoncpp-dev

  library for reading and writing JSON for C++ (devel files)

• dep: libseqlib2 (= 1.2.0+dfsg-11)

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

• dep: libssw-dev

  Development headers and static libraries for libssw
  myös näennäispaketti, jonka toteuttaa libssw-dev

• dep: zlib1g-dev

  compression library - development

Imuroi libseqlib-dev

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	215.5 kt	1,196.0 kt	[tiedostoluettelo]
arm64	202.7 kt	1,207.0 kt	[tiedostoluettelo]
armel	203.7 kt	1,107.0 kt	[tiedostoluettelo]
armhf	205.2 kt	1,004.0 kt	[tiedostoluettelo]
i386	228.1 kt	1,030.0 kt	[tiedostoluettelo]
mips64el	224.3 kt	1,430.0 kt	[tiedostoluettelo]
ppc64el	222.5 kt	1,300.0 kt	[tiedostoluettelo]
s390x	207.9 kt	1,207.0 kt	[tiedostoluettelo]