Paketti: libseqlib-dev (1.2.0+dfsg-9)

[ Source: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Tagit: Software Development: Kirjastot, Role: Development Library

Muut pakettiin libseqlib-dev liittyvät paketit

• dep: libbwa-dev

  Burrows-Wheeler Aligner source files

• dep: libfml-dev

  development headers for libfml

• dep: libhts-dev

  development files for the HTSlib

• dep: libjsoncpp-dev

  library for reading and writing JSON for C++ (devel files)

• dep: libseqlib2 (= 1.2.0+dfsg-9)

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

• dep: libssw-dev

  Development headers and static libraries for libssw
  myös näennäispaketti, jonka toteuttaa libssw-dev

• dep: zlib1g-dev

  compression library - development

Imuroi libseqlib-dev

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	204.5 kt	1,166.0 kt	[tiedostoluettelo]
arm64	197.4 kt	1,162.0 kt	[tiedostoluettelo]
armel	198.5 kt	1,082.0 kt	[tiedostoluettelo]
armhf	201.1 kt	983.0 kt	[tiedostoluettelo]
i386	218.3 kt	1,011.0 kt	[tiedostoluettelo]
mips64el	221.2 kt	1,408.0 kt	[tiedostoluettelo]
mipsel	218.3 kt	1,089.0 kt	[tiedostoluettelo]
ppc64el	220.0 kt	1,285.0 kt	[tiedostoluettelo]
s390x	188.5 kt	1,170.0 kt	[tiedostoluettelo]