Paketti: r-bioc-shortread (1.60.0-2 ja muut)

[ Source: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Muut pakettiin r-bioc-shortread liittyvät paketit

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.7) [hppa, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libgcc-s1 (>= 3.0) [ei hppa, ia64, m68k, sparc64]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC:n apukirjasto

• dep: libgcc1 (>= 1:3.0) [sparc64]

  Paketti ei saatavilla

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paketti ei saatavilla

• dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11) [ei m68k, sparc64]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 5.2) [m68k, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.4 [m68k]

  Paketti ei saatavilla

• dep: r-api-3.5 [sparc64]

  Paketti ei saatavilla

• dep: r-api-4.0 [ei m68k, sparc64]

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketti ei saatavilla

• dep: r-api-bioc-3.18 [ei m68k, sparc64, x32]

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Paketti ei saatavilla

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.23.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [ei m68k]

• dep: r-bioc-genomeinfodb (>= 1.1.19) [m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.15.2) [ei m68k]

• dep: r-bioc-genomicalignments (>= 1.15.6) [ei m68k]

  BioConductor representation and manipulation of short genomic alignments

  dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]

• dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [ei m68k]

• dep: r-bioc-iranges (>= 2.13.12) [ei m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.3.7) [m68k]

• dep: r-bioc-rhtslib [ei m68k, sparc64]

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [ei m68k]

• dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.25) [ei m68k]

• dep: r-bioc-xvector [ei m68k, sparc64]

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc [ei m68k, sparc64]

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-latticeextra

  GNU R package of additional graphical displays based on lattice

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [ei m68k, sparc64]

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-cran-runit [ei sparc64]

  GNU R package providing unit testing framework

Imuroi r-bioc-shortread

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.60.0-2	5,065.2 kt	7,559.0 kt	[tiedostoluettelo]
amd64	1.60.0-2	5,068.8 kt	7,507.0 kt	[tiedostoluettelo]
arm64	1.60.0-2	5,063.6 kt	7,557.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.60.0-2	5,064.8 kt	7,527.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.60.0-2	5,072.7 kt	7,620.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.36.0-1	4,189.1 kt	6,069.0 kt	[tiedostoluettelo]
mips64el	1.60.0-2	5,058.1 kt	7,571.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.60.0-2	5,070.7 kt	7,626.0 kt	[tiedostoluettelo]
ppc64el	1.60.0-2	5,069.7 kt	7,621.0 kt	[tiedostoluettelo]
riscv64	1.60.0-2	5,066.5 kt	7,491.0 kt	[tiedostoluettelo]
s390x	1.60.0-2	5,067.5 kt	7,521.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.60.0-2	5,066.6 kt	7,494.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.40.0-1	4,896.8 kt	7,343.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.56.1-1	5,043.0 kt	7,479.0 kt	[tiedostoluettelo]