Package: libseqlib2 (1.2.0+dfsg-11 and others)

[ Source: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Tags: Role: Shared Library

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Download libseqlib2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.2.0+dfsg-11+b4	152.3 kB	537.0 kB	[list of files]
amd64	1.2.0+dfsg-11+b4	170.0 kB	567.0 kB	[list of files]
arm64	1.2.0+dfsg-11+b4	141.9 kB	469.0 kB	[list of files]
armhf	1.2.0+dfsg-11+b4	136.2 kB	339.0 kB	[list of files]
i386	1.2.0+dfsg-11+b4	177.5 kB	515.0 kB	[list of files]
ia64 (unofficial port)	1.2.0+dfsg-11+b1	192.3 kB	885.0 kB	[list of files]
loong64 (unofficial port)	1.2.0+dfsg-11+b3	149.6 kB	532.0 kB	[list of files]
m68k (unofficial port)	1.2.0+dfsg-11+b4	156.8 kB	475.0 kB	[list of files]
ppc64 (unofficial port)	1.2.0+dfsg-11+b4	167.6 kB	661.0 kB	[list of files]
ppc64el	1.2.0+dfsg-11+b4	171.7 kB	597.0 kB	[list of files]
riscv64	1.2.0+dfsg-11+b4	159.1 kB	396.0 kB	[list of files]
s390x	1.2.0+dfsg-11+b4	155.9 kB	504.0 kB	[list of files]
sh4 (unofficial port)	1.2.0+dfsg-11+b4	176.0 kB	470.0 kB	[list of files]
sparc64 (unofficial port)	1.2.0+dfsg-11+b4	128.3 kB	1,059.0 kB	[list of files]
x32 (unofficial port)	1.2.0+dfsg-11+b4	165.5 kB	475.0 kB	[list of files]