Package: libssw0 (1.1-16 and others)

[ Source: libssw  ]

fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

Tags: Role: Shared Library

Other Packages Related to libssw0

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.32) [ppc64el]

  dep: libc6 (>= 2.4) [armhf, i386, m68k, ppc64, s390x, sparc64]

  dep: libc6 (>= 2.42) [loong64, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, loong64, ppc64, ppc64el, riscv64, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armhf]

  dep: libgcc-s1 (>= 4.2) [alpha, i386, s390x, sh4, sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libstdc++6 (>= 11) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [not ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g

  compression library - runtime

Download libssw0

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1-16	25.9 kB	84.0 kB	[list of files]
amd64	1.1-16	22.4 kB	63.0 kB	[list of files]
arm64	1.1-16	20.2 kB	84.0 kB	[list of files]
armhf	1.1-16	21.8 kB	83.0 kB	[list of files]
i386	1.1-16	27.2 kB	83.0 kB	[list of files]
ia64 (unofficial port)	1.1-14	28.7 kB	89.0 kB	[list of files]
loong64	1.1-16	21.3 kB	83.0 kB	[list of files]
m68k (unofficial port)	1.1-16	24.2 kB	75.0 kB	[list of files]
ppc64 (unofficial port)	1.1-16	26.5 kB	83.0 kB	[list of files]
ppc64el	1.1-16	23.6 kB	83.0 kB	[list of files]
riscv64	1.1-16	25.6 kB	59.0 kB	[list of files]
s390x	1.1-16	26.7 kB	71.0 kB	[list of files]
sh4 (unofficial port)	1.1-16	28.2 kB	83.0 kB	[list of files]
sparc64 (unofficial port)	1.1-16	24.6 kB	1,045.0 kB	[list of files]
x32 (unofficial port)	1.1-16	21.8 kB	59.0 kB	[list of files]