Paket: libseqlib2 (1.2.0+dfsg-11 och andra)

[ Källkod: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Märken: Role: Shared Library

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Hämta libseqlib2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.2.0+dfsg-11+b1	148,5 kbyte	538,0 kbyte	[filförteckning]
amd64	1.2.0+dfsg-11+b1	167,7 kbyte	569,0 kbyte	[filförteckning]
arm64	1.2.0+dfsg-11+b1	140,9 kbyte	468,0 kbyte	[filförteckning]
armel	1.2.0+dfsg-11+b1	132,9 kbyte	431,0 kbyte	[filförteckning]
armhf	1.2.0+dfsg-11+b1	135,8 kbyte	335,0 kbyte	[filförteckning]
i386	1.2.0+dfsg-11+b1	174,9 kbyte	511,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.2.0+dfsg-11+b1	192,3 kbyte	885,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.2.0+dfsg-11+b1	152,1 kbyte	475,0 kbyte	[filförteckning]
mips64el	1.2.0+dfsg-11+b1	140,6 kbyte	558,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.2.0+dfsg-11+b1	164,4 kbyte	661,0 kbyte	[filförteckning]
ppc64el	1.2.0+dfsg-11+b1	165,1 kbyte	597,0 kbyte	[filförteckning]
riscv64	1.2.0+dfsg-11+b1	155,1 kbyte	404,0 kbyte	[filförteckning]
s390x	1.2.0+dfsg-11+b1	154,8 kbyte	512,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.2.0+dfsg-11+b1	177,9 kbyte	470,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.2.0+dfsg-11+b1	129,8 kbyte	1.061,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.2.0+dfsg-11+b1	162,8 kbyte	471,0 kbyte	[filförteckning]