Pakket: nanopolish (0.14.0-1 en anderen)

[ Bron: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Andere aan nanopolish gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [niet armel, armhf, ppc64el]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103-1t64

  HDF5 C runtime files - serial version

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libslow5-0t64 (>= 0.5.1)

  library for reading & writing SLOW5 files

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libstreamvbyte0 (>= 0.4.1)

  fast integer compression in C using the StreamVByte codec

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [niet armel, armhf]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

nanopolish downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	0.14.0-1+b1	2.144,8 kB	9.343,0 kB	[overzicht]
arm64	0.14.0-1+b1	2.073,9 kB	9.219,0 kB	[overzicht]
armel	0.14.0-1+b1	2.078,6 kB	9.253,0 kB	[overzicht]
armhf	0.14.0-1+b1	2.085,1 kB	8.861,0 kB	[overzicht]
i386	0.14.0-1+b1	2.167,9 kB	9.413,0 kB	[overzicht]
mips64el	0.14.0-1+b1	2.105,4 kB	9.592,0 kB	[overzicht]
ppc64el	0.14.0-1+b1	2.149,2 kB	9.603,0 kB	[overzicht]