套件：python-cogent（1.9-14） [debports]
framework for genomic biology
PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:
* controlling third-party applications, * devising workflows; querying databases, * conducting novel probabilistic analyses of biological sequence evolution, and * generating publication quality graphics.It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.
負責填實 python-cogent 的套件
- python3-cogent3
- framework for genomic biology
其他與 python-cogent 有關的套件
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- dep: libc6 (>= 2.28)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: python
- 套件暫時不可用
- dep: python (<< 2.8)
- dep: python (>= 2.7~)
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- dep: python-matplotlib
- 套件暫時不可用
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- dep: python-numpy (>= 1:1.14.3)
- 套件暫時不可用
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- dep: python-numpy-abi9
- 套件暫時不可用
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- rec: blast2
- 套件暫時不可用
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- rec: cd-hit
- suite of programs designed to quickly group sequences
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- rec: clearcut
- extremely efficient phylogenetic tree reconstruction
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- rec: dialign
- Segment-based multiple sequence alignment
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- rec: muscle
- Multiple alignment program of protein sequences
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- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
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- sug: clustalw
- global multiple nucleotide or peptide sequence alignment
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- sug: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mothur
- sequence analysis suite for research on microbiota
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- sug: parsinsert
- Parsimonious Insertion of unclassified sequences into phylogenetic trees
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- sug: python-cogent-doc
- docs for python3-cogent3
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- sug: rdp-classifier
- extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
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- sug: rtax
- Classification of sequence reads of 16S ribosomal RNA gene