[ 源代码: pairtools ]
软件包:python3-pairtools(1.0.2-2 以及其他的)
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end sequences of Hi-C DNA molecules - Sort .pairs files for downstream analyses - Detect, tag and remove PCR/optical duplicates - Generate extensive statistics of Hi-C datasets - Select Hi-C pairs given flexibly defined criteria - Restore .sam alignments from Hi-C pairs
其他与 python3-pairtools 有关的软件包
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- dep: cython3
- C-Extensions for Python 3
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [除 amd64, arm64, ppc64el]
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- dep: libgcc-s1 (>= 3.0) [除 armel, armhf]
- GCC 支持库
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libstdc++6 (>= 11)
- GNU 标准 C++ 库,第3版
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- dep: python3
- 交互式高级面向对象语言(默认 python3 版本)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
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- dep: python3-bioframe
- library to enable flexible, scalable operations on genomic interval dataframes
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-numpy (>= 1:1.22.0)
- Fast array facility to the Python 3 language
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- dep: python3-numpy-abi9
- 本虚包由这些包填实: python3-numpy
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pysam (>= 0.20.0+ds-3~)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)
下载 python3-pairtools
硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
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amd64 | 1.0.2-2+b1 | 161.5 kB | 685.0 kB | [文件列表] |
arm64 | 1.0.2-2+b1 | 147.9 kB | 702.0 kB | [文件列表] |
armel | 1.0.2-2+b1 | 144.8 kB | 622.0 kB | [文件列表] |
armhf | 1.0.2-2+b1 | 144.9 kB | 554.0 kB | [文件列表] |
i386 | 1.0.2-2+b1 | 160.8 kB | 674.0 kB | [文件列表] |
mips64el | 1.0.2-2+b1 | 146.4 kB | 776.0 kB | [文件列表] |
mipsel | 1.0.2-2+b1 | 144.8 kB | 702.0 kB | [文件列表] |
ppc64el | 1.0.2-2+b1 | 158.4 kB | 766.0 kB | [文件列表] |