Пакунок: r-bioc-saturn (1.10.0+dfsg-1)

[ Source: r-bioc-saturn  ]

scalable analysis of differential transcript usage for RNA-sequencing

This Bioconductor package can be used for Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing.

Applications satuRn provides a higly performant and scalable framework for performing differential transcript usage analyses. The package consists of three main functions. The first function, fitDTU, fits quasi-binomial generalized linear models that model transcript usage in different groups of interest. The second function, testDTU, tests for differential usage of transcripts between groups of interest. Finally, plotDTU visualizes the usage profiles of transcripts in groups of interest.

Інші пакунки пов'язані з r-bioc-saturn

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.18

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-boot

  GNU R package for bootstrapping functions from Davison and Hinkley

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-locfdr

  GNU R computation of local false discovery rates

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• sug: r-bioc-dexseq

  GNU R inference of differential exon usage in RNA-Seq

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-cran-covr

  test coverage for GNU R packages

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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