Paket: libtfbs-perl (0.7.1+ds-3)

[ Kaynak: libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Etiketler: Yazılım Geliştirme: Perl Geliştirme, Kitaplıklar, Alan: field::biology, field::biology:bioinformatics, Geliştirildiği dil: C, implemented-in::perl, interface::commandline, Rol: Geliştirme Kitaplığı, Program

libtfbs-perl ile İlgili Diğer Paketler

• dep: bioperl

  Perl tools for computational molecular biology

• dep: libc6 (>= 2.7)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libwww-perl

  simple and consistent interface to the world-wide web

• dep: pdl (>= 1:2.085-1+b1)

  perl data language: Perl extensions for numerics

• dep: pdlapi-20

  sanal paketi sağlayan pdl

• dep: perl (>= 5.38.2-3.2)

  Larry Wall's Practical Extraction and Report Language

• dep: perlapi-5.38.2t64

  sanal paketi sağlayan perl-base

• rec: libgd-gd2-perl

  sanal paketi sağlayan libgd-perl

  ya da libgd-gd2-noxpm-perl

  sanal paketi sağlayan libgd-perl

libtfbs-perl indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
armel	217,6 kB	979,0 kB	[dosya listesi]