Paket: kleborate-examples (2.0.1-1)

[ Kaynak: kleborate  ]

tool to screen Klebsiella genome assemblies (example data)

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

This package provides example data end tests that are used in autopkgtest.

kleborate-examples ile İlgili Diğer Paketler

• rec: kleborate

  tool to screen Klebsiella genome assemblies

kleborate-examples indir

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Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	5.851,7 kB	5.861,0 kB	[dosya listesi]