Package: libseqlib-dev (1.2.0+dfsg-11)
Links for libseqlib-dev
Debian Resources:
Download Source Package libseqlib:
- [libseqlib_1.2.0+dfsg-11.dsc]
- [libseqlib_1.2.0+dfsg.orig.tar.xz]
- [libseqlib_1.2.0+dfsg-11.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
This package contains the header files and static library.
Other Packages Related to libseqlib-dev
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- dep: libbwa-dev
- Burrows-Wheeler Aligner source files
-
- dep: libfml-dev
- development headers for libfml
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- dep: libhts-dev
- development files for the HTSlib
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- dep: libjsoncpp-dev
- library for reading and writing JSON for C++ (devel files)
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- dep: libseqlib2 (= 1.2.0+dfsg-11)
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data
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- dep: libssw-dev
- Development headers and static libraries for libssw
also a virtual package provided by libssw-dev
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- dep: zlib1g-dev
- compression library - development
Download libseqlib-dev
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 215.5 kB | 1,196.0 kB | [list of files] |
| arm64 | 202.7 kB | 1,207.0 kB | [list of files] |
| armel | 203.7 kB | 1,107.0 kB | [list of files] |
| armhf | 205.2 kB | 1,004.0 kB | [list of files] |
| i386 | 228.1 kB | 1,030.0 kB | [list of files] |
| mips64el | 224.3 kB | 1,430.0 kB | [list of files] |
| ppc64el | 222.5 kB | 1,300.0 kB | [list of files] |
| s390x | 207.9 kB | 1,207.0 kB | [list of files] |