Paket: r-bioc-genomicalignments (1.42.0-2 och andra)

[ Källkod: r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Andra paket besläktade med r-bioc-genomicalignments

• dep: libc6 (>= 2.16) [x32]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3) [hppa]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: r-api-3.4 [m68k]

  Paketet inte tillgängligt

• dep: r-api-3.5 [sparc64]

  Paketet inte tillgängligt

• dep: r-api-4.0 [ej m68k, sparc64]

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.20 [ej hppa, ia64, m68k, sh4, sparc64, x32]

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Paketet inte tillgängligt

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.37.0) [ej m68k, sparc64]

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [sparc64]

  dep: r-bioc-biostrings (>= 2.55.7) [ej m68k, sparc64]

• dep: r-bioc-genomeinfodb (>= 1.13.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.29.14) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]

  dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]

  dep: r-bioc-genomicranges (>= 1.55.3) [ej hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.11.16) [m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.15.12) [sparc64]

  dep: r-bioc-iranges (>= 2.23.9) [ej m68k, sparc64]

• dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [ej m68k]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]

  dep: r-bioc-s4vectors (>= 0.27.12) [ej m68k, sparc64]

• dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.9.13) [ej m68k]

• rec: r-bioc-shortread (>= 1.24.0)

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [ej m68k, sparc64]

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2 [ej m68k, sparc64]

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger [ej sparc64]

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-shortread [ej sparc64]

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-knitr [ej hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [ej sparc64]

  GNU R package providing unit testing framework

Hämta r-bioc-genomicalignments

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.42.0-2	2.109,5 kbyte	3.453,0 kbyte	[filförteckning]
amd64	1.42.0-2	2.110,4 kbyte	3.397,0 kbyte	[filförteckning]
arm64	1.42.0-2	2.109,8 kbyte	3.453,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1.38.2-1	2.092,9 kbyte	2.965,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.38.2-1	2.095,1 kbyte	3.004,0 kbyte	[filförteckning]
loong64 (inofficiell anpassning)	1.42.0-2	2.110,3 kbyte	3.453,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.14.0-1	1.648,5 kbyte	2.183,0 kbyte	[filförteckning]
mips64el	1.42.0-2	2.107,7 kbyte	3.459,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.42.0-2	2.112,9 kbyte	3.454,0 kbyte	[filförteckning]
ppc64el	1.42.0-2	2.111,7 kbyte	3.453,0 kbyte	[filförteckning]
riscv64	1.42.0-2	2.110,4 kbyte	3.385,0 kbyte	[filförteckning]
s390x	1.42.0-2	2.109,5 kbyte	3.397,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.38.2-1	2.091,9 kbyte	2.955,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.18.1-1	2.048,6 kbyte	2.867,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.34.0-1	2.063,0 kbyte	2.904,0 kbyte	[filförteckning]