Paket: r-bioc-rsamtools (2.18.0+dfsg-1 och andra)

[ Källkod: r-bioc-rsamtools  ]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Andra paket besläktade med r-bioc-rsamtools

• dep: libbz2-1.0 [ej hppa, m68k, sh4, sparc64, x32]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15) [m68k, sparc64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.34) [ej alpha, ia64, m68k, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.18.0) [alpha, hppa, ia64, sh4, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.18.0) [amd64, arm64, mips64el, ppc64, ppc64el, riscv64, s390x]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC stödbibliotek

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Paketet inte tillgängligt

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paketet inte tillgängligt

• dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

  GCC OpenMP (GOMP) support library

• dep: liblzma5 (>= 5.1.1alpha+20120614) [ej hppa, m68k, sh4, sparc64, x32]

  XZ-format compression library

• dep: libstdc++6 (>= 11) [ej m68k, sparc64]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 5.2) [m68k, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.4 [m68k]

  Paketet inte tillgängligt

• dep: r-api-3.5 [sparc64]

  Paketet inte tillgängligt

• dep: r-api-4.0 [ej m68k, sparc64]

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.18 [ej m68k, sparc64, x32]

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Paketet inte tillgängligt

• dep: r-base-core (>= 3.4.2-2) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.1.3) [m68k]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.25.1) [ej m68k]

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [ej m68k]

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [ej m68k]

• dep: r-bioc-iranges (>= 2.13.12) [ej m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.3.7) [m68k]

• dep: r-bioc-rhtslib (>= 1.99.3) [ej m68k, sparc64]

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.25) [ej m68k]

• dep: r-bioc-xvector (>= 0.15.1) [m68k]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.19.7) [ej m68k]

• dep: r-bioc-zlibbioc [ej m68k]

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-bitops

  GNU R package implementing bitwise operations

• dep: zlib1g (>= 1:1.2.3.3) [ej hppa, sh4, x32]

  Kompressionsbibliotek - körtidspaket

• rec: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [ej m68k, sparc64]

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-shortread (>= 1.19.10) [ej sparc64]

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-knitr [ej m68k, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [ej sparc64]

  GNU R package providing unit testing framework

Hämta r-bioc-rsamtools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	2.18.0+dfsg-1+b1	3.499,6 kbyte	5.779,0 kbyte	[filförteckning]
amd64	2.18.0+dfsg-1+b1	3.500,1 kbyte	5.581,0 kbyte	[filförteckning]
arm64	2.18.0+dfsg-1+b1	3.456,7 kbyte	5.585,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	2.18.0+dfsg-1	3.506,9 kbyte	5.731,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	2.18.0+dfsg-1+b1	3.636,0 kbyte	6.843,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.30.0-1	3.206,0 kbyte	5.170,0 kbyte	[filförteckning]
mips64el	2.18.0+dfsg-1+b1	3.452,0 kbyte	5.771,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	2.18.0+dfsg-1+b1	3.537,8 kbyte	6.173,0 kbyte	[filförteckning]
ppc64el	2.18.0+dfsg-1+b1	3.545,3 kbyte	5.969,0 kbyte	[filförteckning]
riscv64	2.18.0+dfsg-1+b2	3.518,6 kbyte	5.393,0 kbyte	[filförteckning]
s390x	2.18.0+dfsg-1+b1	3.509,8 kbyte	5.713,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	2.18.0+dfsg-1	3.552,9 kbyte	5.453,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.34.1-1	3.424,1 kbyte	5.736,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	2.14.0-1	3.666,4 kbyte	5.700,0 kbyte	[filförteckning]