Paket: python3-pairtools (0.3.0-2 och andra)

[ Källkod: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Andra paket besläktade med python3-pairtools

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.14) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10)

  dep: python3 (>= 3.9~)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-nose

  test discovery and running for Python3 unittest

• dep: python3-numpy

  Fast array facility to the Python 3 language

Hämta python3-pairtools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	0.3.0-2+b2	121,3 kbyte	440,0 kbyte	[filförteckning]
arm64	0.3.0-2+b2	110,5 kbyte	407,0 kbyte	[filförteckning]
armhf	0.3.0-2+b2	109,4 kbyte	342,0 kbyte	[filförteckning]
i386	0.3.0-2+b2	119,7 kbyte	426,0 kbyte	[filförteckning]