Paket: prokka (1.14.6+dfsg-3)

[ Källkod: prokka  ]

rapid annotation of prokaryotic genomes

A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.

Andra paket besläktade med prokka

• dep: aragorn

  tRNA and tmRNA detection in nucleotide sequences

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: hmmer

  profile hidden Markov models for protein sequence analysis

• dep: infernal

  inference of RNA secondary structural alignments

• dep: less

  pager program similar to more

• dep: libbio-perl-perl

  BioPerl core perl modules

• dep: libbio-searchio-hmmer-perl

  perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)

• dep: libswiss-perl

  Perl API to the UniProt database

• dep: libxml-simple-perl

  Perl module for reading and writing XML

• dep: ncbi-blast+ (>= 2.8)

  next generation suite of BLAST sequence search tools

• dep: ncbi-tools-bin

  NCBI libraries for biology applications (text-based utilities)

• dep: parallel

  build and execute command lines from standard input in parallel

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: prodigal

  Microbial (bacterial and archaeal) gene finding program

Hämta prokka

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	9.734,2 kbyte	92.548,0 kbyte	[filförteckning]