Пакет: mosdepth (0.3.11+ds-3)

[ Источник: mosdepth  ]

BAM/CRAM depth calculation biological sequencing

Many small reads are produced by high-throughput "next generation" sequencing technologies. The final sequence is derived from how these reads are overlapping towards a consensus. The more reads are covering/confirming parts of a nucleotide seq, the higher the confidence is. Too many reads would be indicative of e.g. repeats in the genome.

mosdepth can output:

 *  per-base depth about 2x as fast samtools depth--about 25 minutes
    of CPU time for a 30X genome.
 *  mean per-window depth given a window size--as would be used for
    CNV calling.
 *  the mean per-region given a BED file of regions.
 *  a distribution of proportion of bases covered at or above a given
    threshold for each chromosome and genome-wide.
 *  quantized output that merges adjacent bases as long as they fall
    in the same coverage bins e.g. (10-20)
 *  threshold output to indicate how many bases in each region are
    covered at the given thresholds.

when appropriate, the output files are bgzipped and indexed for ease of use.

Другие пакеты, относящиеся к mosdepth

• dep: libc6 (>= 2.34)

  библиотека GNU C: динамически подключаемые библиотеки
  также виртуальный пакет, предоставляемый libc6-udeb

• dep: libhts-dev

  development files for the HTSlib

Загрузка mosdepth

Загрузить для всех доступных архитектур

Архитектура	Размер пакета	В установленном виде	Файлы
amd64	173,6 Кб	632,0 Кб	[список файлов]
arm64	170,0 Кб	663,0 Кб	[список файлов]
armhf	164,8 Кб	470,0 Кб	[список файлов]
i386	193,4 Кб	706,0 Кб	[список файлов]
ppc64el	198,4 Кб	791,0 Кб	[список файлов]
riscv64	187,1 Кб	555,0 Кб	[список файлов]