Pacote: python3-dna-jellyfish (2.3.0-15 e outros)

[ Fonte: jellyfish  ]

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Outros pacotes relacionados a python3-dna-jellyfish

• dep: libc6 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.0) [não armel, armhf, i386]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libjellyfish-2.0-2 (>= 2.3.0)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  Biblioteca C++ padrão da GNU v3

  dep: libstdc++6 (>= 9) [não armel, armhf]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

Download de python3-dna-jellyfish

Baixe para todas as arquiteturas disponíveis

Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	2.3.0-15+b3	52.1 kB	175.0 kB	[lista de arquivos]
arm64	2.3.0-15+b3	49.6 kB	171.0 kB	[lista de arquivos]
armel	2.3.0-15+b3	51.9 kB	168.0 kB	[lista de arquivos]
armhf	2.3.0-15+b3	52.8 kB	140.0 kB	[lista de arquivos]
i386	2.3.0-15+b3	60.5 kB	184.0 kB	[lista de arquivos]
mips64el	2.3.0-15+b3	50.5 kB	242.0 kB	[lista de arquivos]
ppc64el	2.3.0-15+b3	55.1 kB	235.0 kB	[lista de arquivos]