Pakiet: gasic (0.0.r19-4)

[ Pakiet źródłowy: gasic  ]

genome abundance similarity correction

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.

Inne pakiety związane z gasic

• dep: bowtie

  Ultrafast memory-efficient short read aligner

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: bwa

  Burrows-Wheeler Aligner

• dep: python

  Interaktywny, wysokopoziomowy język obiektowy (wersja Python2)

• dep: python-biopython

  Python library for bioinformatics (implemented in Python 2)

• dep: python-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python-numpy

  Szybkie dodawanie obiektów tablicy, moduł do języka Python

• dep: python-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 2)

• dep: python-scipy

  scientific tools for Python

• dep: seqan-apps

  C++ library for the analysis of biological sequences

Pobieranie gasic

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Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	19,8 KiB	74,0 KiB	[lista plików]