Pakiet: r-bioc-mutationalpatterns (3.0.1+dfsg-2)

[ Pakiet źródłowy: r-bioc-mutationalpatterns  ]

GNU R comprehensive genome-wide analysis of mutational processes

This BioConductor package provides an extensive toolset for the characterization and visualization of a wide range of mutational patterns in base substitution catalogs.

Inne pakiety związane z r-bioc-mutationalpatterns

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-api-bioc-3.12

  pakiet wirtualny udostępniany przez r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.4-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.18.0)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.40.0)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.40.0)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-genomeinfodb (>= 1.12.0)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.24.0)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.6.0)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-variantannotation (>= 1.18.1)

  BioConductor annotation of genetic variants

• dep: r-cran-cowplot (>= 0.9.2)

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-dplyr (>= 0.8.3)

  GNU R grammar of data manipulation

• dep: r-cran-ggalluvial (>= 0.12.2)

  GNU R alluvial plots in 'ggplot2'

• dep: r-cran-ggdendro (>= 0.1-20)

  GNU R create dendrograms and tree diagrams using 'ggplot2'

• dep: r-cran-ggplot2 (>= 2.1.0)

  implementation of the Grammar of Graphics

• dep: r-cran-magrittr (>= 1.5)

  GNU R forward-pipe operator

• dep: r-cran-nmf (>= 0.20.6)

  GNU R framework to perform non-negative matrix factorization

• dep: r-cran-pracma (>= 1.8.8)

  practical numerical math functions for GNU R

• dep: r-cran-purrr (>= 0.3.2)

  GNU R functional programming tools

• dep: r-cran-stringr (>= 1.4.0)

  Make it easier to work with strings

• dep: r-cran-tibble (>= 2.1.3)

  GNU R Simple Data Frames

• dep: r-cran-tidyr (>= 1.0.0)

  GNU R package to easily tidy data

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle (>= 2.0.3)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart (>= 2.28.0)

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer (>= 1.32.2)

  GNU R interface to genome browsers and their annotation tracks

• sug: r-cran-gridextra (>= 2.2.1)

  GNU R package with extensions for the grid package

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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