Pakket: r-bioc-isoformswitchanalyzer (2.2.0+ds-1 en anderen)

[ Bron: r-bioc-isoformswitchanalyzer  ]

Identify, Annotate and Visualize Alternative Splicing and

Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

Andere aan r-bioc-isoformswitchanalyzer gerelateerde pakketten

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [niet x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel [niet x32]

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.50.0)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-dexseq

  GNU R inference of differential exon usage in RNA-Seq

• dep: r-bioc-drimseq [x32]

  Differential transcript usage and tuQTL analyses with

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-pfamanalyzer [niet x32]

  GNU R identification of domain isotypes in pfam data

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors [niet x32]

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-saturn (>= 1.7.0) [niet x32]

  scalable analysis of differential transcript usage for RNA-sequencing

• dep: r-bioc-summarizedexperiment [niet x32]

  BioConductor assay container

• dep: r-bioc-sva [niet x32]

  GNU R Surrogate Variable Analysis

• dep: r-bioc-tximeta (>= 1.7.12)

  Transcript Quantification Import with Automatic Metadata

• dep: r-bioc-tximport (>= 1.7.1)

  transcript-level estimates for biological sequencing

• dep: r-bioc-xvector

  BioConductor representation and manpulation of external sequences

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-futile.logger

  logging utility for GNU R

• dep: r-cran-ggplot2 [x32]

  implementation of the Grammar of Graphics

  dep: r-cran-ggplot2 (>= 3.3.5) [niet x32]

• dep: r-cran-gridextra

  GNU R package with extensions for the grid package

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcurl

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-readr

  GNU R package to read rectangular text data

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr [niet x32]

  GNU R package to easily tidy data

• dep: r-cran-venndiagram

  Generate High-Resolution Venn and Euler Plots

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

r-bioc-isoformswitchanalyzer downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.2.0+ds-1	4.010,0 kB	4.761,0 kB	[overzicht]
amd64	2.2.0+ds-1	4.010,6 kB	4.709,0 kB	[overzicht]
arm64	2.2.0+ds-1	4.010,6 kB	4.761,0 kB	[overzicht]
hppa (unofficial port)	2.2.0+ds-1	4.010,0 kB	4.701,0 kB	[overzicht]
ia64 (unofficial port)	2.2.0+ds-1	4.010,7 kB	4.701,0 kB	[overzicht]
mips64el	2.2.0+ds-1	4.010,6 kB	4.761,0 kB	[overzicht]
ppc64 (unofficial port)	2.2.0+ds-1	4.010,4 kB	4.761,0 kB	[overzicht]
ppc64el	2.2.0+ds-1	4.010,7 kB	4.761,0 kB	[overzicht]
riscv64	2.2.0+ds-1	4.010,3 kB	4.701,0 kB	[overzicht]
s390x	2.2.0+ds-1	4.010,6 kB	4.701,0 kB	[overzicht]
sh4 (unofficial port)	2.2.0+ds-1	4.009,9 kB	4.761,0 kB	[overzicht]
x32 (unofficial port)	1.20.0+ds-1	3.589,3 kB	4.202,0 kB	[overzicht]