Pakket: megadepth (1.2.0-4 en anderen)

[ Bron: megadepth  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Andere aan megadepth gerelateerde pakketten

• dep: libbigwig0t64 (>= 0.4.6)

  C library for handling bigWig files

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl3t64-gnutls (>= 7.16.2) [sparc64]

  easy-to-use client-side URL transfer library (GnuTLS flavour)

• dep: libdeflate0 (>= 1.0) [sparc64]

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4) [sparc64]

  compressiebibliotheek - programma's

• sug: r-bioc-megadepth

  BioCOnductor BigWig and BAM related utilities

megadepth downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.2.0-4+b1	78,4 kB	276,0 kB	[overzicht]
amd64	1.2.0-4+b1	81,0 kB	275,0 kB	[overzicht]
arm64	1.2.0-4+b1	71,0 kB	275,0 kB	[overzicht]
armel	1.2.0-4+b1	70,9 kB	234,0 kB	[overzicht]
armhf	1.2.0-4+b1	72,5 kB	178,0 kB	[overzicht]
hppa (unofficial port)	1.2.0-4+b1	80,2 kB	252,0 kB	[overzicht]
i386	1.2.0-4+b1	84,1 kB	274,0 kB	[overzicht]
ia64 (unofficial port)	1.2.0-4+b1	99,7 kB	467,0 kB	[overzicht]
mips64el	1.2.0-4+b1	71,9 kB	282,0 kB	[overzicht]
ppc64 (unofficial port)	1.2.0-4+b1	81,5 kB	339,0 kB	[overzicht]
ppc64el	1.2.0-4+b1	83,3 kB	339,0 kB	[overzicht]
riscv64	1.2.0-4+b2	79,8 kB	219,0 kB	[overzicht]
s390x	1.2.0-4+b1	82,1 kB	271,0 kB	[overzicht]
sh4 (unofficial port)	1.2.0-4+b1	91,8 kB	275,0 kB	[overzicht]
sparc64 (unofficial port)	1.2.0-4+b1	70,2 kB	1.047,0 kB	[overzicht]
x32 (unofficial port)	1.2.0-4+b1	83,8 kB	258,0 kB	[overzicht]