Pakket: megadepth (1.2.0-4)

[ Bron: megadepth  ]

computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Andere aan megadepth gerelateerde pakketten

• dep: libbigwig0 (>= 0.4.6+dfsg)

  C library for handling bigWig files

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [niet amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• sug: r-bioc-megadepth

  BioCOnductor BigWig and BAM related utilities

megadepth downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	78,3 kB	266,0 kB	[overzicht]
arm64	68,9 kB	274,0 kB	[overzicht]
armel	68,7 kB	273,0 kB	[overzicht]
armhf	69,1 kB	209,0 kB	[overzicht]
i386	81,1 kB	273,0 kB	[overzicht]
mips64el	68,8 kB	281,0 kB	[overzicht]
mipsel	70,7 kB	279,0 kB	[overzicht]
ppc64el	81,5 kB	338,0 kB	[overzicht]
s390x	70,2 kB	262,0 kB	[overzicht]