Pakket: lumpy-sv (0.3.1+dfsg-7 en anderen)

[ Bron: lumpy-sv  ]

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

Andere aan lumpy-sv gerelateerde pakketten

• dep: bamkit

  tools for common BAM file manipulations

• dep: libbamtools2.4.0 [sparc64]

  Pakket niet beschikbaar

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg) [hppa, ppc64]

  Pakket niet beschikbaar

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg) [niet hppa, ppc64, sparc64]

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.29) [hppa, ppc64, sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.34) [niet alpha, hppa, ia64, ppc64, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.16.2) [hppa, sparc64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3 (>= 1.10) [hppa, ppc64, sparc64]

  C library for high-throughput sequencing data formats

• dep: libhts3t64 (>= 1.17) [niet hppa, ppc64, sparc64]

  C library for high-throughput sequencing data formats

• dep: libssl1.1 (>= 1.1.0) [hppa, sparc64]

  Pakket niet beschikbaar

• dep: libstdc++6 (>= 13.1) [niet hppa, ppc64, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [hppa, ppc64, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samblaster

  marks duplicates, extracts discordant/split reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4) [hppa, sparc64]

  compressiebibliotheek - programma's

• rec: sambamba

  tools for working with SAM/BAM data

lumpy-sv downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.3.1+dfsg-7+b1	185,1 kB	806,0 kB	[overzicht]
amd64	0.3.1+dfsg-7+b1	205,3 kB	689,0 kB	[overzicht]
arm64	0.3.1+dfsg-7+b1	168,9 kB	677,0 kB	[overzicht]
armel	0.3.1+dfsg-7+b1	162,2 kB	567,0 kB	[overzicht]
armhf	0.3.1+dfsg-7+b1	169,2 kB	443,0 kB	[overzicht]
hppa (unofficial port)	0.3.1+dfsg-1	192,6 kB	673,0 kB	[overzicht]
i386	0.3.1+dfsg-7+b1	221,6 kB	735,0 kB	[overzicht]
ia64 (unofficial port)	0.3.1+dfsg-7+b1	238,6 kB	1.187,0 kB	[overzicht]
m68k (unofficial port)	0.3.1+dfsg-7+b1	184,6 kB	627,0 kB	[overzicht]
mips64el	0.3.1+dfsg-7+b1	175,8 kB	777,0 kB	[overzicht]
ppc64 (unofficial port)	0.3.1+dfsg-1	182,5 kB	803,0 kB	[overzicht]
ppc64el	0.3.1+dfsg-7+b1	194,5 kB	805,0 kB	[overzicht]
riscv64	0.3.1+dfsg-7+b2	189,7 kB	537,0 kB	[overzicht]
sh4 (unofficial port)	0.3.1+dfsg-7+b1	222,3 kB	676,0 kB	[overzicht]
sparc64 (unofficial port)	0.3.1+dfsg-1	151,6 kB	584,0 kB	[overzicht]
x32 (unofficial port)	0.3.1+dfsg-7+b1	211,4 kB	671,0 kB	[overzicht]