Pakket: maq (0.7.1-10 en anderen)

[ Bron: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Andere aan maq gerelateerde pakketten

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.5) [armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.2) [niet amd64, armhf, s390x]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.2.3.3) [niet arm64]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.4) [arm64]

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

maq downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	0.7.1-10	295,1 kB	545,0 kB	[overzicht]
arm64	0.7.1-10+b1	286,0 kB	582,0 kB	[overzicht]
armhf	0.7.1-10	286,4 kB	472,0 kB	[overzicht]
i386	0.7.1-10	305,4 kB	581,0 kB	[overzicht]
ppc64el	0.7.1-10	303,5 kB	645,0 kB	[overzicht]
riscv64	0.7.1-10	296,8 kB	493,0 kB	[overzicht]
s390x	0.7.1-10	299,0 kB	557,0 kB	[overzicht]