Pakket: maq (0.7.1-9 en anderen)

[ Bron: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Andere aan maq gerelateerde pakketten

• dep: libc6 (>= 2.29) [niet alpha, ia64, riscv64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.31) [ia64]

• dep: libgcc-s1 (>= 3.0) [sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, i386, ia64, mips64el, ppc64, ppc64el, riscv64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

maq downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.7.1-9	304,7 kB	584,0 kB	[overzicht]
amd64	0.7.1-9	295,7 kB	543,0 kB	[overzicht]
arm64	0.7.1-9	286,7 kB	519,0 kB	[overzicht]
armel	0.7.1-9	285,5 kB	530,0 kB	[overzicht]
armhf	0.7.1-9	286,9 kB	474,0 kB	[overzicht]
hppa (unofficial port)	0.7.1-9	309,5 kB	559,0 kB	[overzicht]
i386	0.7.1-9	306,2 kB	575,0 kB	[overzicht]
ia64 (unofficial port)	0.7.1-9	329,5 kB	752,0 kB	[overzicht]
m68k (unofficial port)	0.7.1-9	297,1 kB	558,0 kB	[overzicht]
mips64el	0.7.1-9	296,9 kB	578,0 kB	[overzicht]
ppc64 (unofficial port)	0.7.1-9	301,7 kB	647,0 kB	[overzicht]
ppc64el	0.7.1-9	304,8 kB	647,0 kB	[overzicht]
riscv64	0.7.1-9+b1	298,6 kB	498,0 kB	[overzicht]
s390x	0.7.1-9	288,4 kB	547,0 kB	[overzicht]
sh4 (unofficial port)	0.7.1-9	318,8 kB	527,0 kB	[overzicht]
sparc64 (unofficial port)	0.7.1-9	289,3 kB	546,0 kB	[overzicht]
x32 (unofficial port)	0.7.1-9	295,1 kB	539,0 kB	[overzicht]