Package: seqan-raptor (3.0.1+ds-5 and others)

[ Source: seqan-raptor  ]

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

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Download seqan-raptor

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.0.1+ds-5	579.4 kB	2,362.0 kB	[list of files]
amd64	3.0.1+ds-5	646.1 kB	2,087.0 kB	[list of files]
arm64	3.0.1+ds-5	551.8 kB	1,911.0 kB	[list of files]
ia64 (unofficial port)	2.0.0.0.git.fecfbca+ds-3	695.6 kB	4,733.0 kB	[list of files]
mips64el	3.0.1+ds-5	529.1 kB	2,319.0 kB	[list of files]
ppc64 (unofficial port)	3.0.0+ds-2	458.7 kB	1,831.0 kB	[list of files]
ppc64el	3.0.1+ds-5	633.6 kB	2,359.0 kB	[list of files]
riscv64	3.0.1+ds-5+b1	620.9 kB	1,560.0 kB	[list of files]
sparc64 (unofficial port)	3.0.1+ds-2	473.3 kB	2,111.0 kB	[list of files]