Paquet : libvcflib-tools (1.0.9+dfsg1-3 et autres)

[ Paquet source : libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Autres paquets associés à libvcflib-tools

• dep: libc6 (>= 2.34)

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  un paquet virtuel est également fourni par libc6-udeb

• dep: libdisorder0 (>= 0.0.2)

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• dep: libfastahack0 (>= 1.0.0+dfsg)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc-s1 (>= 3.4)

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• dep: libgomp1 (>= 4.2.1)

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• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 13.1)

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• dep: libtabixpp0t64 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib2 (>= 1.0.9+dfsg1)

  C++ library for parsing and manipulating VCF files

• dep: libwfa2-0 (>= 2.3.3)

  exact gap-affine algorithm (shared library)

• dep: python3

  langage orienté objet interactif de haut niveau – version par défaut de Python 3

• dep: r-base-core

  noyau de GNU R, un système de calculs statistiques et de graphiques

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

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• dep: r-cran-plyr

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• sug: r-cran-pracma

  practical numerical math functions for GNU R

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Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
riscv64	1.0.9+dfsg1-3+b1	619,9 ko	2 974,0 ko	[liste des fichiers]