Source Package: trinityrnaseq (2.11.0+dfsg-6)
Links for trinityrnaseq
Debian-palvelut:
Ylläpitäjät:
External Resources:
Seuraavat binääripaketit on käännetty tästä lähdepaketista:
- trinityrnaseq
- RNA-Seq De novo Assembly
- trinityrnaseq-examples
- RNA-Seq De novo Assembly common example and testing files
Muut pakettiin trinityrnaseq liittyvät paketit
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- adep:
debhelper-compat
(= 13)
- Paketti ei saatavilla
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- adep:
jellyfish
- count k-mers in DNA sequences
-
- adep:
libjung-free-java
- Java Universal Network/Graph Framework
-
- adep:
javahelper
- Helper scripts for packaging Java programs
-
- adep:
libgetopt-java
- GNU getopt - Java port
-
- adep:
default-jdk
- Standard Java or Java compatible Development Kit
-
- adep:
parafly
- parallel command processing using OpenMP
-
- adep:
libjs-jquery
- JavaScript library for dynamic web applications
-
- adep:
jaligner
- Smith-Waterman algorithm with Gotoh's improvement
-
- adep:
libhts-dev
- development files for the HTSlib
-
- adep:
bowtie2
- ultrafast memory-efficient short read aligner
-
- adep:
salmon
- wicked-fast transcript quantification from RNA-seq data
-
- adep:
zlib1g-dev
- compression library - development
-
- adep:
cmake
- Järjestelmäriippumaton, avoimen lähdekoodin make-järjestelmä
-
- adep:
r-bioc-edger
- Empirical analysis of digital gene expression data in R
-
- adep:
r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
-
- adep:
r-bioc-rots
- GNU R Teproducibility-Optimized Test Statistic
-
- adep:
r-cran-fastcluster
- Fast hierarchical clustering routines for GNU R
-
- adep:
liburi-perl
- module to manipulate and access URI strings
-
- adep:
r-cran-ape
- GNU R package for Analyses of Phylogenetics and Evolution
-
- adep:
r-bioc-ctc
- Cluster and Tree Conversion
-
- adep:
r-cran-gplots
- GNU R package with tools for plotting data by Greg Warnes et al
-
- adep:
r-cran-readr
- GNU R package to read rectangular text data
-
- adep:
r-bioc-biobase
- base functions for Bioconductor
-
- adep:
r-bioc-qvalue
- GNU R package for Q-value estimation for FDR control
-
- adep:
r-bioc-goseq
- GNU R gene ontology analyser for RNA-seq and other length biased data
-
- adep:
r-bioc-tximport
- transcript-level estimates for biological sequencing
-
- adep:
python3-htseq
- Python3 high-throughput genome sequencing read analysis utilities
-
- adep:
rna-star
- ultrafast universal RNA-seq aligner
-
- adep:
picard-tools
- Command line tools to manipulate SAM and BAM files
-
- adep:
gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
-
- adep:
hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- adep:
subread
- toolkit for processing next-gen sequencing data
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- adep:
kallisto
- near-optimal RNA-Seq quantification
-
- adep:
python3-hisat2
- Python scripts accompanying hisat2
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- adep:
r-cran-argparse
- GNU R command line parser for optional and positional arguments
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- adep:
r-bioc-dexseq
- GNU R inference of differential exon usage in RNA-Seq
-
- adep:
tabix
- generic indexer for TAB-delimited genome position files
