Paket: unicycler (0.5.0+dfsg-1)

[ Quellcode: unicycler  ]

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

Andere Pakete mit Bezug zu unicycler

• dep: bcftools

  Aufruf und Manipulation genomischer Varianten von VCF/BCF-Dateien

• dep: bowtie2

  Ultraschnelles und speichersparendes Alignmentprogramm für kurze DNA-Sequenzen

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libc6 (>= 2.34)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC Support-Bibliothek

• dep: libstdc++6 (>= 11)

  GNU-Implementierung der Standard-C++-Bibliothek (Version 3)

• dep: miniasm

  ultrafast de novo assembler for long noisy DNA sequencing reads

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: pilon

  automated genome assembly improvement and variant detection tool

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3~)

• dep: python3-setuptools

  Erweiterungen für die Python3 Distutils

• dep: racon

  consensus module for raw de novo DNA assembly of long uncorrected reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: spades (>= 3.14)

  genome assembler for single-cell and isolates data sets

• dep: zlib1g (>= 1:1.1.4)

  Kompressions-Bibliothek - Laufzeit

• rec: unicycler-data

  hybrid assembly pipeline for bacterial genomes (data package)

unicycler herunterladen

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Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	843,0 kB	3.108,0 kB	[Liste der Dateien]