Paket: python3-pairtools-examples (0.3.0-3.2 und andere) [debports]

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Process sequencing data from a Hi-C experiment (examples)

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

This package contains some examples

Andere Pakete mit Bezug zu python3-pairtools-examples

• enh: python3-pairtools

  Framework to process sequencing data from a Hi-C experiment

python3-pairtools-examples herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
ppc64 (inoffizielle Portierung)	0.3.0-3.2+b2	12,1 kB	50,0 kB	[Liste der Dateien]