Paket: yaha (0.1.83-2)

[ Quellcode: yaha  ]

find split-read mappings on single-end queries

yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation:

 * The default “Optimal Query Coverage” (-OQC) mode reports the
   best set of alignments that cover the length of each query.
 * Using “Filter By Similarity” (-FBS), along with the best set of
   alignments, yaha will also output alignments that are highly similar
   to an alignment in the best set.
 * Finally, yaha can output all the alignments found for each query.

The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome.

Andere Pakete mit Bezug zu yaha

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.4) [nicht arm64, ppc64el]

• dep: libgcc-s1 (>= 3.5) [armel, armhf]

  GCC Support-Bibliothek

  dep: libgcc-s1 (>= 4.2) [mipsel]

yaha herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	42,6 kB	109,0 kB	[Liste der Dateien]
arm64	39,4 kB	101,0 kB	[Liste der Dateien]
armel	35,8 kB	92,0 kB	[Liste der Dateien]
armhf	35,8 kB	72,0 kB	[Liste der Dateien]
i386	45,9 kB	116,0 kB	[Liste der Dateien]
mips64el	46,1 kB	129,0 kB	[Liste der Dateien]
mipsel	45,0 kB	123,0 kB	[Liste der Dateien]
ppc64el	48,4 kB	145,0 kB	[Liste der Dateien]
s390x	41,2 kB	113,0 kB	[Liste der Dateien]