Package: nanopolish (0.13.2-3)

[ Source: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Other Packages Related to nanopolish

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf, mipsel, ppc64el]

  GCC support library

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [not arm64]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [arm64]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

Download nanopolish

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	2,199.8 kB	9,539.0 kB	[list of files]
arm64	2,130.2 kB	9,334.0 kB	[list of files]
armel	2,126.7 kB	9,405.0 kB	[list of files]
armhf	2,141.1 kB	8,985.0 kB	[list of files]
i386	2,247.0 kB	9,797.0 kB	[list of files]
mips64el	2,140.4 kB	9,757.0 kB	[list of files]
mipsel	2,163.9 kB	9,796.0 kB	[list of files]
ppc64el	2,202.2 kB	9,795.0 kB	[list of files]
s390x	2,134.3 kB	9,626.0 kB	[list of files]