all options
squeeze  ] [  wheezy  ] [  jessie  ] [  sid  ]
[ Source: mummer  ]

Package: mummer (3.22~dfsg-2)

Links for mummer

Screenshot

Debian Resources:

Download Source Package mummer:

Maintainers:

External Resources:

Similar packages:

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to mummer

  • depends
  • recommends
  • suggests
  • enhances

Download mummer

Download for all available architectures
Architecture Package Size Installed Size Files
s390 426.5 kB1,180.0 kB [list of files]