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[ 原始碼: tree-puzzle  ]

套件: tree-puzzle (5.2-5)

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

標籤: 領域: 生物學, 生物資訊學, 實做語言: C, 使用者介面: 命令行, 角色: 程式, 範圍: 實用程式, Purpose: Analysing, Comparing, 支援的格式: 純文字

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