全部搜尋項
squeeze  ] [  wheezy  ] [  jessie  ] [  sid  ]
[ 原始碼: alien-hunter  ]

套件: alien-hunter (1.7-1)

alien-hunter 的相關超連結

Screenshot

Debian 的資源:

下載原始碼套件 alien-hunter

維護小組:

外部的資源:

相似套件:

Interpolated Variable Order Motifs to identify horizontally acquired DNA

Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.

The manuscript describing the alien_hunter algorithm is available from Bioinformatics: Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Vernikos GS, Parkhill J Bioinformatics. 2006;. PMID: 16837528

標籤: 領域: 生物學, 結構生物學, 實做語言: Java, Perl, 角色: 程式, 範圍: 實用程式, Purpose: Analysing

其他與 alien-hunter 有關的套件

  • 依賴
  • 推薦
  • 建議
  • enhances

下載 alien-hunter

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
all 29.8 kB164.0 kB [文件列表]