套件：dotter（4.44.1+dfsg-7.1 以及其他的）

[ 原始碼： seqtools  ]

detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences.

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

標籤: Interface Toolkit: GTK

其他與 dotter 有關的套件

• dep: libatk1.0-0t64 (>= 1.12.4) [sparc64]

  ATK accessibility toolkit

• dep: libc6 (>= 2.34) [除 alpha, ia64, sh4]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2) [alpha, ia64, ppc64, sparc64, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.16.2) [除 alpha, ia64, ppc64, sparc64, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libfontconfig1 (>= 2.12.6) [sparc64]

  generic font configuration library - runtime

• dep: libfreetype6 (>= 2.2.1) [sparc64]

  FreeType 2 font engine, shared library files

• dep: libgbtools0t64 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, hppa, ia64, m68k, sh4]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 支援函式庫

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支援函式庫

• dep: libgdk-pixbuf-2.0-0 (>= 2.22.0) [sparc64]

  GDK Pixbuf library

• dep: libglib2.0-0t64 (>= 2.75.3)

  GLib library of C routines

• dep: libgtk2.0-0 (>= 2.12.0) [alpha, sparc64]

  GTK graphical user interface library - old version

• dep: libgtk2.0-0t64 (>= 2.12.0) [除 alpha, sparc64]

  GTK graphical user interface library - old version

• dep: libharfbuzz0b (>= 0.6.0) [sparc64]

  OpenType text shaping engine (shared library)

• dep: libjsoncpp25 (>= 1.9.5) [sparc64]

  library for reading and writing JSON for C++

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangoft2-1.0-0 (>= 1.14.0) [sparc64]

  Layout and rendering of internationalized text

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

下載 dotter

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	4.44.1+dfsg-7.1	591。6 kB	840。0 kB	[檔案列表]
amd64	4.44.1+dfsg-7.1+b1	596。6 kB	805。0 kB	[檔案列表]
arm64	4.44.1+dfsg-7.1+b1	584。3 kB	837。0 kB	[檔案列表]
armel	4.44.1+dfsg-7.1+b1	576。7 kB	759。0 kB	[檔案列表]
armhf	4.44.1+dfsg-7.1+b1	577。8 kB	699。0 kB	[檔案列表]
hppa （非官方移植版）	4.44.1+dfsg-7.1	593。3 kB	795。0 kB	[檔案列表]
i386	4.44.1+dfsg-7.1+b1	604。0 kB	835。0 kB	[檔案列表]
ia64 （非官方移植版）	4.44.1+dfsg-7.1	621。8 kB	1，052。0 kB	[檔案列表]
m68k （非官方移植版）	4.44.1+dfsg-7.1	592。5 kB	810。0 kB	[檔案列表]
mips64el	4.44.1+dfsg-7.1+b1	597。7 kB	924。0 kB	[檔案列表]
ppc64 （非官方移植版）	4.44.1+dfsg-7.1	602。2 kB	964。0 kB	[檔案列表]
ppc64el	4.44.1+dfsg-7.1+b1	602。2 kB	901。0 kB	[檔案列表]
riscv64	4.44.1+dfsg-7.1+b1	595。1 kB	757。0 kB	[檔案列表]
s390x	4.44.1+dfsg-7.1+b1	592。8 kB	825。0 kB	[檔案列表]
sh4 （非官方移植版）	4.44.1+dfsg-7.1	607。6 kB	836。0 kB	[檔案列表]
sparc64 （非官方移植版）	4.44.1+dfsg-7.1	580。2 kB	1，554。0 kB	[檔案列表]
x32 （非官方移植版）	4.44.1+dfsg-7.1	596。7 kB	786。0 kB	[檔案列表]