套件：qiime（2024.2.0-1）
qiime 的相關連結
Debian 的資源：
下載原始碼套件 qiime：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Steffen Moeller (QA 頁面)
- Liubov Chuprikova (QA 頁面)
- Andreas Tille (QA 頁面)
- Étienne Mollier (QA 頁面)
外部的資源：
- 主頁 [qiime2.org]
相似套件：
Quantitative Insights Into Microbial Ecology
Microbes are surrounding us, animals, plants and all their parasites with strong effect on these and the environment these live in. Soil quality comes to mind but also the effect that bacteria have on each other. Humans are influencing the absolute and relative abundance of bacteria by antibiotics, food, fertilizers - you name it - and these changes affect us.
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:
* Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line,graphical)
QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.
QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.
其他與 qiime 有關的套件
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-appdirs
- determining appropriate platform-specific directories (Python 3)
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- dep: python3-bibtexparser
- Python 3 library to parse bibtex files
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- dep: python3-dateutil
- powerful extensions to the standard Python 3 datetime module
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- dep: python3-decorator
- simplify usage of Python decorators by programmers
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- dep: python3-dill
- Serialize all of Python 3 (almost)
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- dep: python3-flufl.lock
- NFS-safe file-based lock with timeouts (Python 3)
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- dep: python3-lxml
- pythonic binding for the libxml2 and libxslt libraries
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-parsl
- Parallel Scripting Library for Python
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- dep: python3-psutil
- module providing convenience functions for managing processes (Python3)
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- dep: python3-pyparsing
- alternative to creating and executing simple grammars - Python 3.x
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- dep: python3-tomlkit
- style-preserving TOML library for Python
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- dep: python3-tzlocal
- tzinfo object for the local timezone
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- rec: q2-cutadapt
- QIIME 2 plugin to work with adapters in sequence data
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- rec: q2-demux
- QIIME 2 plugin for demultiplexing of sequence reads
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- rec: q2-feature-classifier
- QIIME 2 plugin supporting taxonomic classification
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- rec: q2-feature-table
- QIIME 2 plugin supporting operations on feature tables
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- rec: q2-metadata
- QIIME 2 plugin for working with and visualizing Metadata
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- rec: q2-quality-filter
- QIIME2 plugin for PHRED-based filtering and trimming
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- rec: q2-types
- QIIME 2 plugin defining types for microbiome analysis
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- rec: q2cli
- Click-based command line interface for QIIME 2
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- rec: q2templates
- Design template package for QIIME 2 Plugins