套件：mapsembler2（2.2.4+dfsg1-4 以及其他的）

[ 原始碼： mapsembler2  ]

bioinformatics targeted assembly software

Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).

It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.

Mapsembler2 may be used for (not limited to):

 - Validate an assembled sequence (input as starter), e.g. from a de
   Bruijn graph assembly where read-coherence was not enforced.
 - Checks if a gene (input as starter) has an homolog in a set of reads
 - Checks if a known enzyme is present in a metagenomic NGS read set.
 - Enrich unmappable reads by extending them, possibly making them mappable
 - Checks what happens at the extremities of a contig
 - Remove contaminants or symbiont reads from a read set

其他與 mapsembler2 有關的套件

• dep: bc

  GNU bc arbitrary precision calculator language

• dep: libc6 (>= 2.11) [hppa]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [sh4]

  dep: libc6 (>= 2.29) [amd64, arm64, ppc64el, s390x]

  dep: libc6 (>= 2.4) [m68k, sparc64]

  dep: libc6 (>= 2.8) [ppc64]

• dep: libc6.1 (>= 2.8) [alpha]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64el, s390x]

  GCC 支援函式庫

• dep: libgcc1 [x32]

  套件暫時不可用

  dep: libgcc1 (>= 1:4.1.1) [alpha, ppc64, sparc64]

  dep: libgcc1 (>= 1:4.3) [sh4]

• dep: libgcc2 (>= 4.2.1) [m68k]

  套件暫時不可用

• dep: libgcc4 (>= 4.1.1) [hppa]

  套件暫時不可用

• dep: libgomp1 (>= 4.9) [除 m68k, sh4, sparc64]

  GCC OpenMP (GOMP) support library

• dep: libhdf5-7 [x32]

  套件暫時不可用

• dep: libhdf5-8 [alpha, hppa, ppc64]

  套件暫時不可用

• dep: libstdc++6 [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 4.4.0) [m68k, sh4, sparc64]

  dep: libstdc++6 (>= 4.8) [hppa]

  dep: libstdc++6 (>= 4.9) [alpha, ppc64]

  dep: libstdc++6 (>= 5.2) [amd64, arm64, ppc64el, s390x]

• dep: zlib1g (>= 1:1.2.3.4)

  壓縮函式庫 - 跑程式時用(runtime)

下載 mapsembler2

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	2.2.3+dfsg-1	241。2 kB	910。0 kB	[檔案列表]
amd64	2.2.4+dfsg1-4	707。5 kB	1，283。0 kB	[檔案列表]
arm64	2.2.4+dfsg1-4	685。7 kB	1，247。0 kB	[檔案列表]
hppa （非官方移植版）	2.2.3+dfsg-1	241。5 kB	803。0 kB	[檔案列表]
m68k （非官方移植版）	2.1.6+dfsg-1	262。2 kB	453。0 kB	[檔案列表]
ppc64 （非官方移植版）	2.2.3+dfsg-1	228。6 kB	928。0 kB	[檔案列表]
ppc64el	2.2.4+dfsg1-4	722。5 kB	1，571。0 kB	[檔案列表]
s390x	2.2.4+dfsg1-4	683。2 kB	1，307。0 kB	[檔案列表]
sh4 （非官方移植版）	2.1.6+dfsg-1	285。5 kB	469。0 kB	[檔案列表]
sparc64 （非官方移植版）	2.1.6+dfsg-1	263。1 kB	458。0 kB	[檔案列表]
x32 （非官方移植版）	2.2.3+dfsg-1	233。7 kB	706。0 kB	[檔案列表]