套件：fastml（3.11-4）
maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).
其他與 fastml 有關的套件
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- dep: libc6 (>= 2.34) [除 alpha, ia64, sh4]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支援函式庫
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支援函式庫
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
下載 fastml
| 硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|
| alpha （非官方移植版） | 811。5 kB | 3，999。0 kB | [檔案列表] |
| amd64 | 925。6 kB | 3，474。0 kB | [檔案列表] |
| arm64 | 774。3 kB | 3，290。0 kB | [檔案列表] |
| armel | 771。6 kB | 3，195。0 kB | [檔案列表] |
| armhf | 769。9 kB | 2，187。0 kB | [檔案列表] |
| hppa （非官方移植版） | 818。6 kB | 3，237。0 kB | [檔案列表] |
| i386 | 939。9 kB | 3，547。0 kB | [檔案列表] |
| ia64 （非官方移植版） | 1，023。3 kB | 7，140。0 kB | [檔案列表] |
| m68k （非官方移植版） | 833。8 kB | 3，359。0 kB | [檔案列表] |
| mips64el | 768。4 kB | 4，153。0 kB | [檔案列表] |
| ppc64 （非官方移植版） | 863。6 kB | 4，250。0 kB | [檔案列表] |
| ppc64el | 880。4 kB | 4，058。0 kB | [檔案列表] |
| riscv64 | 880。2 kB | 2，502。0 kB | [檔案列表] |
| s390x | 913。6 kB | 3，634。0 kB | [檔案列表] |
| sh4 （非官方移植版） | 1，026。7 kB | 3，163。0 kB | [檔案列表] |
| sparc64 （非官方移植版） | 700。2 kB | 5，156。0 kB | [檔案列表] |
| x32 （非官方移植版） | 931。8 kB | 3，327。0 kB | [檔案列表] |