套件：bio-rainbow（2.0.4+dfsg-2 以及其他的）

[ 原始碼： bio-rainbow  ]

clustering and assembling short reads for bioinformatics

Efficient tool for clustering and assembling short reads, especially for RAD.

Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.

其他與 bio-rainbow 有關的套件

• dep: libc6 (>= 2.29) [除 alpha, ia64, riscv64, sh4]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

  dep: libc6.1 (>= 2.31) [ia64]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

下載 bio-rainbow

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	2.0.4+dfsg-2	62。7 kB	210。0 kB	[檔案列表]
amd64	2.0.4+dfsg-2	58。8 kB	186。0 kB	[檔案列表]
arm64	2.0.4+dfsg-2	58。1 kB	178。0 kB	[檔案列表]
armel	2.0.4+dfsg-2	56。7 kB	179。0 kB	[檔案列表]
armhf	2.0.4+dfsg-2	56。0 kB	143。0 kB	[檔案列表]
hppa （非官方移植版）	2.0.4+dfsg-2	63。2 kB	194。0 kB	[檔案列表]
i386	2.0.4+dfsg-2	63。9 kB	203。0 kB	[檔案列表]
ia64 （非官方移植版）	2.0.4+dfsg-2	75。4 kB	311。0 kB	[檔案列表]
m68k （非官方移植版）	2.0.4+dfsg-2	56。1 kB	175。0 kB	[檔案列表]
mips64el	2.0.4+dfsg-2	61。4 kB	209。0 kB	[檔案列表]
ppc64 （非官方移植版）	2.0.4+dfsg-2	65。8 kB	306。0 kB	[檔案列表]
ppc64el	2.0.4+dfsg-2	65。6 kB	306。0 kB	[檔案列表]
riscv64	2.0.4+dfsg-2+b2	63。0 kB	163。0 kB	[檔案列表]
s390x	2.0.4+dfsg-2	55。9 kB	194。0 kB	[檔案列表]
sh4 （非官方移植版）	2.0.4+dfsg-2	65。9 kB	167。0 kB	[檔案列表]
sparc64 （非官方移植版）	2.0.4+dfsg-2	52。9 kB	181。0 kB	[檔案列表]
x32 （非官方移植版）	2.0.4+dfsg-2	59。3 kB	183。0 kB	[檔案列表]