套件：ruby-crb-blast（0.6.9-5）
ruby-crb-blast 的相關連結
Debian 的資源：
下載原始碼套件 ruby-crb-blast：
- [ruby-crb-blast_0.6.9-5.dsc]
- [ruby-crb-blast_0.6.9.orig.tar.gz]
- [ruby-crb-blast_0.6.9-5.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [github.com]
相似套件：
Run conditional reciprocal best blast
CRB-BLAST is a novel method for finding orthologs between one set of sequences and another. This is particularly useful in genome and transcriptome annotation.
CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by performing BLAST alignments of query->target and target->query. Reciprocal best BLAST hits are those where the best match for any given query sequence in the query->target alignment is also the best hit of the match in the reverse (target->query) alignment.
Reciprocal best BLAST is a very conservative way to assign orthologs. The main innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to each pairwise alignment by taking into account the overall relatedness of the two datasets being compared. This is done by fitting a function to the distribution of alignment e-values over sequence lengths. The function provides the e-value cutoff for a sequence of given length.
其他與 ruby-crb-blast 有關的套件
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: ruby
- Interpreter of object-oriented scripting language Ruby (default version)
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- dep: ruby-bio (>= 2.0)
- Ruby tools for computational molecular biology
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- dep: ruby-fixwhich (>= 1.0.2)
- ruby module that emulates the 'which' program
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- dep: ruby-threach (>= 0.2.0)
- Threaded each
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- dep: ruby-trollop (>= 2.0)
- command-line argument processing library