[ 原始碼： umis ]
套件：umis（1.0.9-1 以及其他的）
tools for processing UMI RNA-tag data
Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.
There are four steps in this process.
1. Formatting reads 2. Filtering noisy cellular barcodes 3. Pseudo-mapping to cDNAs 4. Counting molecular identifiers
其他與 umis 有關的套件
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- dep: libc6 (>= 2.27)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-regex
- alternative regular expression module (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-toolz
- List processing tools and functional utilities
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- sug: umis-examples
- tools for processing UMI RNA-tag data (examples)