[ 原始碼： r-bioc-genomicfeatures ]
套件：r-bioc-genomicfeatures（1.54.3+dfsg-1）
r-bioc-genomicfeatures 的相關連結
Debian 的資源：
下載原始碼套件 r-bioc-genomicfeatures：
- [r-bioc-genomicfeatures_1.54.3+dfsg-1.dsc]
- [r-bioc-genomicfeatures_1.54.3+dfsg.orig.tar.xz]
- [r-bioc-genomicfeatures_1.54.3+dfsg-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bioconductor.org]
相似套件：
GNU R tools for making and manipulating transcript centric annotations
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
其他與 r-bioc-genomicfeatures 有關的套件
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-api-bioc-3.18
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
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- dep: r-bioc-annotationdbi (>= 1.41.4)
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-biobase (>= 2.15.1)
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.1.0)
- generic functions for Bioconductor
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- dep: r-bioc-biocio
- standard input and output for Bioconductor packages
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- dep: r-bioc-biomart (>= 2.58.2)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-biostrings (>= 2.47.6)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb (>= 1.35.8)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicranges (>= 1.31.17)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.13.23)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rtracklayer (>= 1.51.5)
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors (>= 0.17.29)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-xvector (>= 0.19.7)
- BioConductor representation and manpulation of external sequences
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- dep: r-cran-dbi
- GNU R package providing a generic database interface
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- dep: r-cran-rcurl
- GNU R General network (HTTP/FTP/...) client interface
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- dep: r-cran-rsqlite (>= 2.0)
- Database Interface R driver for SQLite
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- sug: r-bioc-annotationfilter
- facilities for filtering Bioconductor annotation resources
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-ensembldb
- GNU R utilities to create and use an Ensembl based annotation database
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- sug: r-bioc-genomicalignments (>= 1.15.7)
- BioConductor representation and manipulation of short genomic alignments
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- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
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- sug: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-markdown
- GNU R package providing R bindings to the Sundown Markdown rendering library
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- sug: r-cran-runit
- GNU R package providing unit testing framework