[ 原始碼： bcbio ]
套件：python3-bcbio（1.2.9-2） [contrib]
library for analysing high-throughput sequencing data
This package installs the Python 3 libraries of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis.
A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.
其他與 python3-bcbio 有關的套件
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-cyvcf2
- VCF parser based on htslib (Python 3)
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- dep: python3-joblib
- tools to provide lightweight pipelining in Python
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- dep: python3-logbook
- logging system for Python that replaces the standard library's module (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-psutil
- module providing convenience functions for managing processes (Python3)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-six
- Python 2 and 3 compatibility library
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- dep: python3-tornado
- scalable, non-blocking web server and tools - Python 3 package
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- rec: cnvkit
- Copy number variant detection from targeted DNA sequencing
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- rec: gsort
- sort genomic data
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- rec: libfreetype6
- FreeType 2 font engine, shared library files
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- rec: libhts-dev
- development files for the HTSlib
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- rec: lumpy-sv
- general probabilistic framework for structural variant discovery
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- rec: mosdepth
- BAM/CRAM depth calculation biological sequencing
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- rec: multiqc
- output integration for RNA sequencing across tools and samples
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- rec: python3-arrow
- Python3 library to manipulate dates, times, and timestamps
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- rec: python3-geneimpacts
- wraps command line tools to assess variants in gene sequences
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- rec: python3-h5py
- general-purpose Python interface to hdf5
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- rec: python3-pyvcf
- 本虛擬套件由這些套件填實： python3-vcf
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- rec: python3-seqcluster
- analysis of small RNA in NGS data
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- rec: python3-statsmodels
- Python3 module for the estimation of statistical models
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- rec: python3-tabulate
- pretty-print tabular data in Python3
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- rec: r-bioc-purecn
- copy number calling and SNV classification using targeted short read sequencing
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- rec: r-bioc-titancna
- Subclonal copy number and LOH prediction from whole genome sequencing
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- rec: r-other-wasabi
- prepare Sailfish and Salmon output for downstream analysis using GNU R
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- rec: seqan-apps
- C++ library for the analysis of biological sequences
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- rec: snpeff
- genetic variant annotation and effect prediction toolbox - tool
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- rec: vcfanno
- annotate a VCF with other VCFs/BEDs/tabixed files
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- rec: vt
- toolset for short variant discovery in genetic sequence data
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- sug: bcbio-doc
- 套件暫時不可用
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- sug: python3-bioblend
- CloudMan and Galaxy API library (Python 3)
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- sug: python3-dnapilib
- adapter prediction for small RNA sequencing - library
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- sug: python3-msgpack
- Python 3 implementation of MessagePack format