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[ 原始碼: jellyfish  ]

套件:libjellyfish-perl(2.3.1-3 以及其他的)

libjellyfish-perl 的相關連結

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count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

標籤: 軟體開發: Perl 開發, 函式庫, 實做語言: implemented-in::c, implemented-in::perl, 角色: 開發用函式庫

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硬體架構 版本 套件大小 安裝後大小 檔案
amd64 2.3.1-3+b3 55。0 kB177。0 kB [檔案列表]